STLT2(ProGenExpress)R Documentation

Data frame describing the Salmonella typhimurium genome

Description

This is the result of read.ptt on NC_003197.ptt

Usage

data(STLT2)

Format

A data frame with 4425 observations on the following 10 variables.

Start
The start of the feature on the genome
Stop
The end of the feature on the genome
Strand
The strand (+ or -) of the feature
Length
The length of the feature
PID
The PID of the feature
Gene
Gene name
Synonym
Gene Synonym
Code
The COGs category code
COG
The COGs ID
Product
The protein product if the feature

Source

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003 Sep 11;4(1):41.

References

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003 Sep 11;4(1):41.

Examples

data(STLT2)
STLT2[1:5,]

[Package ProGenExpress version 1.0 Index]