Data frame describing the Salmonella typhimurium genome

Description

This is the result of read.ptt on NC_003197.ptt

Usage

data(STLT2)

Format

A data frame with 4425 observations on the following 10 variables.

Start

The start of the feature on the genome

Stop

The end of the feature on the genome

Strand

The strand (+ or -) of the feature

Length

The length of the feature

PID

The PID of the feature

Gene

Gene name

Synonym

Gene Synonym

Code

The COGs category code

COG

The COGs ID

Product

The protein product if the feature

Source

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003 Sep 11;4(1):41.

References

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003 Sep 11;4(1):41.

Examples

data(STLT2)
STLT2[1:5,]